Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35733055 chr14:74517377 C/T 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs35747962 chr2:242555080 G/T 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs35750877 chr3:53099587 A/G 7.69E-6 175 25.08 26.57 11.78 KM Plot
PCPG rs35751059 chr14:74314986 A/AT 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs35757374 chr17:50301060 A/G 6.47E-5 177 25.53 28.38 14.47 KM Plot
PCPG rs35761432 chr8:121401000 G/C 4.06E-6 178 27.2 25.33 19.87 KM Plot
PCPG rs35769864 chr16:89956249 T/C 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs35770856 chr10:131987915 GCA/G 0 174 25.53 25.33 3.17 KM Plot
PCPG rs35772502 chr3:80592960 AT/A 0.000142 175 19.87 24.03 27.4 KM Plot
PCPG rs35824492 chr17:50299079 G/A 6.24E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs35835514 chr14:74433171 GT/GTT 5.36E-6 172 25.28 28.47 10.3 KM Plot
PCPG rs35837657 chr16:71491300 T/C 0 177 24.5 28.47 3.17 KM Plot
PCPG rs35846579 chr14:74594979 C/G 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs35853515 chr16:1699058 T/TA 4.84E-5 177 25.47 19.3 19.83 KM Plot
PCPG rs35853722 chr2:24310755 C/T 0.00011 178 25.28 26.92 17.43 KM Plot